diff --git a/test/DeploymentHelpers/xunit/SkipIfNativeModuleNotInstalledAttribute.cs b/test/DeploymentHelpers/xunit/SkipIfIISNativeVariationsNotEnabledAttribute.cs
similarity index 64%
rename from test/DeploymentHelpers/xunit/SkipIfNativeModuleNotInstalledAttribute.cs
rename to test/DeploymentHelpers/xunit/SkipIfIISNativeVariationsNotEnabledAttribute.cs
index e6e62c2330..ba1c6afe49 100644
--- a/test/DeploymentHelpers/xunit/SkipIfNativeModuleNotInstalledAttribute.cs
+++ b/test/DeploymentHelpers/xunit/SkipIfIISNativeVariationsNotEnabledAttribute.cs
@@ -4,14 +4,13 @@ using Microsoft.AspNet.Testing.xunit;
 namespace DeploymentHelpers
 {
     [AttributeUsage(AttributeTargets.Method, AllowMultiple = false)]
-    public class SkipIfNativeModuleNotInstalledAttribute : Attribute, ITestCondition
+    public class SkipIfIISNativeVariationsNotEnabledAttribute : Attribute, ITestCondition
     {
         public bool IsMet
         {
             get
             {
-                // TODO: Need a better way to detect native module on the machine.
-                return Environment.GetEnvironmentVariable("IIS_NATIVE_MODULE_SETUP") == "true";
+                return Environment.GetEnvironmentVariable("IIS_NATIVE_VARIATIONS_ENABLED") == "true";
             }
         }
 
@@ -19,8 +18,8 @@ namespace DeploymentHelpers
         {
             get
             {
-                return "Skipping Native module test since native module is not installed on IIS. " +
-                        "To run the test, setup the native module and set the environment variable IIS_NATIVE_MODULE_SETUP=true.";
+                return "Skipping Native module test since native module variations are not enabled. " +
+                        "To run the test, setup the native module and set the environment variable IIS_NATIVE_VARIATIONS_ENABLED=true.";
             }
         }
     }
diff --git a/test/DeploymentHelpers/xunit/SkipIfIISVariationsNotEnabledAttribute.cs b/test/DeploymentHelpers/xunit/SkipIfIISVariationsNotEnabledAttribute.cs
new file mode 100644
index 0000000000..082220a914
--- /dev/null
+++ b/test/DeploymentHelpers/xunit/SkipIfIISVariationsNotEnabledAttribute.cs
@@ -0,0 +1,26 @@
+using System;
+using Microsoft.AspNet.Testing.xunit;
+
+namespace DeploymentHelpers
+{
+    [AttributeUsage(AttributeTargets.Method, AllowMultiple = false)]
+    public class SkipIfIISVariationsNotEnabledAttribute : Attribute, ITestCondition
+    {
+        public bool IsMet
+        {
+            get
+            {
+                return Environment.GetEnvironmentVariable("IIS_VARIATIONS_ENABLED") == "true";
+            }
+        }
+
+        public string SkipReason
+        {
+            get
+            {
+                return "Skipping IIS variation of tests. " +
+                        "To run the IIS variations, setup IIS and set the environment variable IIS_VARIATIONS_ENABLED=true.";
+            }
+        }
+    }
+}
\ No newline at end of file
diff --git a/test/E2ETests/Common/Helpers.cs b/test/E2ETests/Common/Helpers.cs
index f7294102a1..2dbfb23d90 100644
--- a/test/E2ETests/Common/Helpers.cs
+++ b/test/E2ETests/Common/Helpers.cs
@@ -1,7 +1,5 @@
 using System;
 using System.IO;
-using System.Net;
-using System.Net.Http;
 using DeploymentHelpers;
 using Microsoft.Framework.Logging;
 
@@ -22,14 +20,18 @@ namespace E2ETests
             return Path.GetFullPath(Path.Combine(Directory.GetCurrentDirectory(), "..", "..", "src", "MusicStore"));
         }
 
-        public static void SetInMemoryStoreForIIS(DeploymentParameters startParameters, ILogger logger)
+        public static void SetInMemoryStoreForIIS(DeploymentParameters deploymentParameters, ILogger logger)
         {
-            if (startParameters.ServerType == ServerType.IIS
-                || startParameters.ServerType == ServerType.IISNativeModule)
+            if (deploymentParameters.ServerType == ServerType.IIS
+                || deploymentParameters.ServerType == ServerType.IISNativeModule)
             {
                 // Can't use localdb with IIS. Setting an override to use InMemoryStore.
                 logger.LogInformation("Creating configoverride.json file to override default config.");
-                var overrideConfig = Path.Combine(startParameters.ApplicationPath, "..", "approot", "src", "MusicStore", "configoverride.json");
+
+                var overrideConfig = deploymentParameters.PublishWithNoSource ?
+                Path.Combine(deploymentParameters.ApplicationPath, "..", "approot", "packages", "MusicStore", "1.0.0", "root", "configoverride.json") :
+                Path.Combine(deploymentParameters.ApplicationPath, "..", "approot", "src", "MusicStore", "configoverride.json");
+
                 overrideConfig = Path.GetFullPath(overrideConfig);
                 File.WriteAllText(overrideConfig, "{\"UseInMemoryStore\": \"true\"}");
             }
diff --git a/test/E2ETests/SmokeTests.cs b/test/E2ETests/SmokeTests.cs
index e0c5658f4a..f3989390c4 100644
--- a/test/E2ETests/SmokeTests.cs
+++ b/test/E2ETests/SmokeTests.cs
@@ -65,10 +65,10 @@ namespace E2ETests
         }
     }
 
-    public class SmokeTests_OnIIS
+    public class SmokeTests_OnIIS_NativeModule
     {
-        [ConditionalTheory(Skip = "IIS based tests not enabled"), Trait("E2Etests", "E2Etests")]
-        [SkipIfNativeModuleNotInstalled]
+        [ConditionalTheory, Trait("E2Etests", "E2Etests")]
+        [SkipIfIISNativeVariationsNotEnabled]
         [FrameworkSkipCondition(RuntimeFrameworks.Mono)]
         [OSSkipCondition(OperatingSystems.Win7And2008R2 | OperatingSystems.MacOSX | OperatingSystems.Unix)]
         [SkipIfCurrentRuntimeIsCoreClr]
@@ -79,8 +79,8 @@ namespace E2ETests
             smokeTestRunner.SmokeTestSuite(serverType, runtimeFlavor, architecture, applicationBaseUrl);
         }
 
-        [ConditionalTheory(Skip = "IIS based tests not enabled"), Trait("E2Etests", "E2Etests")]
-        [SkipIfNativeModuleNotInstalled]
+        [ConditionalTheory, Trait("E2Etests", "E2Etests")]
+        [SkipIfIISNativeVariationsNotEnabled]
         [FrameworkSkipCondition(RuntimeFrameworks.Mono)]
         [OSSkipCondition(OperatingSystems.Win7And2008R2 | OperatingSystems.MacOSX | OperatingSystems.Unix)]
         [SkipOn32BitOS]
@@ -91,22 +91,32 @@ namespace E2ETests
             var smokeTestRunner = new SmokeTests();
             smokeTestRunner.SmokeTestSuite(serverType, runtimeFlavor, architecture, applicationBaseUrl);
         }
+    }
 
-        [ConditionalTheory(Skip = "IIS based tests not enabled"), Trait("E2Etests", "E2Etests")]
+    public class SmokeTests_OnIIS
+    {
+        [ConditionalTheory, Trait("E2Etests", "E2Etests")]
         [FrameworkSkipCondition(RuntimeFrameworks.Mono)]
         [OSSkipCondition(OperatingSystems.MacOSX | OperatingSystems.Unix)]
         [SkipIfCurrentRuntimeIsCoreClr]
-        [InlineData(ServerType.IIS, RuntimeFlavor.coreclr, RuntimeArchitecture.x86, "http://localhost:5013/")]
+        [SkipIfIISVariationsNotEnabled]
+        [InlineData(ServerType.IIS, RuntimeFlavor.clr, RuntimeArchitecture.x86, "http://localhost:5013/")]
+        [InlineData(ServerType.IIS, RuntimeFlavor.coreclr, RuntimeArchitecture.x64, "http://localhost:5013/")]
         public void SmokeTestSuite_On_IIS_X86(ServerType serverType, RuntimeFlavor runtimeFlavor, RuntimeArchitecture architecture, string applicationBaseUrl)
         {
             var smokeTestRunner = new SmokeTests();
-            smokeTestRunner.SmokeTestSuite(serverType, runtimeFlavor, architecture, applicationBaseUrl);
+            smokeTestRunner.SmokeTestSuite(serverType, runtimeFlavor, architecture, applicationBaseUrl, noSource: true);
         }
     }
 
     public class SmokeTests
     {
-        public void SmokeTestSuite(ServerType serverType, RuntimeFlavor donetFlavor, RuntimeArchitecture architecture, string applicationBaseUrl)
+        public void SmokeTestSuite(
+            ServerType serverType,
+            RuntimeFlavor donetFlavor,
+            RuntimeArchitecture architecture,
+            string applicationBaseUrl,
+            bool noSource = false)
         {
             var logger = new LoggerFactory()
                            .AddConsole()
@@ -127,9 +137,12 @@ namespace E2ETests
                 {
                     ApplicationBaseUriHint = applicationBaseUrl,
                     EnvironmentName = "SocialTesting",
+                    PublishWithNoSource = noSource,
                     UserAdditionalCleanup = parameters =>
                     {
-                        if (!Helpers.RunningOnMono)
+                        if (!Helpers.RunningOnMono
+                            && parameters.ServerType != ServerType.IIS
+                            && parameters.ServerType != ServerType.IISNativeModule)
                         {
                             // Mono uses InMemoryStore
                             DbUtils.DropDatabase(musicStoreDbName, logger);