diff --git a/src/Microsoft.Extensions.Caching.SqlConfig.Tools/Microsoft.Extensions.Caching.SqlConfig.Tools.csproj b/src/Microsoft.Extensions.Caching.SqlConfig.Tools/Microsoft.Extensions.Caching.SqlConfig.Tools.csproj
index b80470dad0..6a05d21dde 100644
--- a/src/Microsoft.Extensions.Caching.SqlConfig.Tools/Microsoft.Extensions.Caching.SqlConfig.Tools.csproj
+++ b/src/Microsoft.Extensions.Caching.SqlConfig.Tools/Microsoft.Extensions.Caching.SqlConfig.Tools.csproj
@@ -3,7 +3,7 @@
   <PropertyGroup>
     <TargetFramework>netcoreapp1.0</TargetFramework>
     <AssemblyName>dotnet-sql-cache</AssemblyName>
-    <OutputType>Exe</OutputType>
+    <OutputType>exe</OutputType>
     <Description>Command line tool to create tables and indexes in a Microsoft SQL Server database for distributed caching.</Description>
     <PackageTags>cache;distributedcache;sqlserver</PackageTags>
   </PropertyGroup>
diff --git a/src/Microsoft.Extensions.SecretManager.Tools/Microsoft.Extensions.SecretManager.Tools.csproj b/src/Microsoft.Extensions.SecretManager.Tools/Microsoft.Extensions.SecretManager.Tools.csproj
index a7a16434b8..142fbcbabe 100644
--- a/src/Microsoft.Extensions.SecretManager.Tools/Microsoft.Extensions.SecretManager.Tools.csproj
+++ b/src/Microsoft.Extensions.SecretManager.Tools/Microsoft.Extensions.SecretManager.Tools.csproj
@@ -3,7 +3,7 @@
   <PropertyGroup>
     <TargetFramework>netcoreapp1.0</TargetFramework>
     <AssemblyName>dotnet-user-secrets</AssemblyName>
-    <OutputType>Exe</OutputType>
+    <OutputType>exe</OutputType>
     <Description>Command line tool to manage user secrets for Microsoft.Extensions.Configuration.</Description>
     <PackageTags>configuration;secrets;usersecrets</PackageTags>
     <GenerateUserSecretsAttribute>false</GenerateUserSecretsAttribute>
@@ -17,6 +17,6 @@
   </ItemGroup>
 
   <ItemGroup>
-    <PackageReference Include="Microsoft.Extensions.Configuration.UserSecrets" Version="1.0.0" />
+    <PackageReference Include="Microsoft.Extensions.Configuration.UserSecrets" Version="1.0.1" />
   </ItemGroup>
 </Project>
\ No newline at end of file
diff --git a/src/dir.props b/src/dir.props
index e60794fbbe..addeb75498 100644
--- a/src/dir.props
+++ b/src/dir.props
@@ -11,6 +11,6 @@
       <PackageReference Include="Microsoft.NETCore.App" Version="1.0.0" />
       <None Include="$(MSBuildThisFileDirectory)\prefercliruntime" Pack="true" PackagePath="\prefercliruntime" />
       <!-- required for CLI's that don't yet support the 'prevercliruntime' file -->
-      <None Include="$(ProjectRuntimeConfigFilePath)" Pack="true" PackagePath="lib\$(TargetFramework)" />
+      <None Include="$(ProjectRuntimeConfigFilePath)" Pack="true" PackagePath="lib\$(TargetFramework)" Condition="'$(DesignTimeBuild)'!='true'" />
   </ItemGroup>
 </Project>
\ No newline at end of file
diff --git a/test/Microsoft.DotNet.Watcher.Tools.FunctionalTests/Microsoft.DotNet.Watcher.Tools.FunctionalTests.csproj b/test/Microsoft.DotNet.Watcher.Tools.FunctionalTests/Microsoft.DotNet.Watcher.Tools.FunctionalTests.csproj
index 274d05f92e..2cb75f63ab 100644
--- a/test/Microsoft.DotNet.Watcher.Tools.FunctionalTests/Microsoft.DotNet.Watcher.Tools.FunctionalTests.csproj
+++ b/test/Microsoft.DotNet.Watcher.Tools.FunctionalTests/Microsoft.DotNet.Watcher.Tools.FunctionalTests.csproj
@@ -1,9 +1,12 @@
 <Project Sdk="Microsoft.NET.Sdk">
+
   <Import Project="..\dir.props" />
+
   <PropertyGroup>
-    <TargetFramework>netcoreapp1.0</TargetFramework>
-    <OutputType>Exe</OutputType>
+    <TargetFrameworks>netcoreapp1.0;netcoreapp1.1</TargetFrameworks>
+    <OutputType>exe</OutputType>
   </PropertyGroup>
+
   <ItemGroup>
     <Compile Include="**\*.cs" Exclude="TestProjects\**\*" />
     <Compile Include="..\Shared\**\*.cs" />
@@ -15,7 +18,16 @@
     <ProjectReference Include="..\Microsoft.DotNet.Watcher.Tools.Tests\Microsoft.DotNet.Watcher.Tools.Tests.csproj" />
   </ItemGroup>
 
+  <ItemGroup Condition="'$(TargetFramework)'=='netcoreapp1.1'">
+    <PackageReference Include="Microsoft.NETCore.App" Version="1.1.0" />
+  </ItemGroup>
+
+  <ItemGroup Condition="'$(TargetFramework)'=='netcoreapp1.0'">
+    <PackageReference Include="Microsoft.NETCore.App" Version="1.0.1" />
+  </ItemGroup>
+
   <Target Name="CleanTestProjects" BeforeTargets="CoreCompile;CopyFilesToOutputDirectory">
     <RemoveDir Directories="$(TargetDir)TestProjects" Condition="Exists('$(TargetDir)TestProjects')" />
   </Target>
+
 </Project>
\ No newline at end of file
diff --git a/test/Microsoft.DotNet.Watcher.Tools.FunctionalTests/Scenario/ProjectToolScenario.cs b/test/Microsoft.DotNet.Watcher.Tools.FunctionalTests/Scenario/ProjectToolScenario.cs
index effcb9de32..2b62d17db9 100644
--- a/test/Microsoft.DotNet.Watcher.Tools.FunctionalTests/Scenario/ProjectToolScenario.cs
+++ b/test/Microsoft.DotNet.Watcher.Tools.FunctionalTests/Scenario/ProjectToolScenario.cs
@@ -127,6 +127,20 @@ namespace Microsoft.DotNet.Watcher.Tools.FunctionalTests
             args.Add("--runtimeconfig");
             args.Add(Path.Combine(AppContext.BaseDirectory, thisAssembly + ".runtimeconfig.json"));
 
+            var currentFxVersion = AppContext.GetData("FX_DEPS_FILE") as string;
+            if (currentFxVersion != null)
+            {
+                // This overrides the version of shared fx in the runtimeconfig.json file.
+                // Tests do this to ensure dotnet-watch is executing on the version of Microsoft.NETCore.App
+                // used by the current test project. The test project can target multiple version of
+                // netcoreapp1.x in order to ensure the tool runs when it is lifted to higher netcore versions
+                // due to inclusion of the 'prefercliruntime' file in our nupkg.
+
+                var version = new FileInfo(currentFxVersion).Directory.Name;
+                args.Add("--fx-version");
+                args.Add(version);
+            }
+
             args.Add(Path.Combine(AppContext.BaseDirectory, "dotnet-watch.dll"));
 
             return args;
diff --git a/test/Microsoft.DotNet.Watcher.Tools.FunctionalTests/TestProjects/AppWithDeps/AppWithDeps.csproj b/test/Microsoft.DotNet.Watcher.Tools.FunctionalTests/TestProjects/AppWithDeps/AppWithDeps.csproj
index a0446a8118..40b6fd7ae2 100644
--- a/test/Microsoft.DotNet.Watcher.Tools.FunctionalTests/TestProjects/AppWithDeps/AppWithDeps.csproj
+++ b/test/Microsoft.DotNet.Watcher.Tools.FunctionalTests/TestProjects/AppWithDeps/AppWithDeps.csproj
@@ -1,12 +1,15 @@
 <Project Sdk="Microsoft.NET.Sdk">
+
   <PropertyGroup>
     <TargetFramework>netcoreapp1.0</TargetFramework>
-    <OutputType>Exe</OutputType>
+    <OutputType>exe</OutputType>
   </PropertyGroup>
+
   <ItemGroup>
     <Compile Include="**\*.cs" />
     <EmbeddedResource Include="**\*.resx" />
     <ProjectReference Include="..\Dependency\Dependency.csproj" />
     <PackageReference Include="Microsoft.NETCore.App" Version="1.0.1" />
   </ItemGroup>
+
 </Project>
\ No newline at end of file
diff --git a/test/Microsoft.DotNet.Watcher.Tools.FunctionalTests/TestProjects/AppWithDeps/NuGet.config b/test/Microsoft.DotNet.Watcher.Tools.FunctionalTests/TestProjects/AppWithDeps/NuGet.config
deleted file mode 100644
index d8093c7fa9..0000000000
--- a/test/Microsoft.DotNet.Watcher.Tools.FunctionalTests/TestProjects/AppWithDeps/NuGet.config
+++ /dev/null
@@ -1,8 +0,0 @@
-<?xml version="1.0" encoding="utf-8"?>
-<configuration>
-  <packageSources>
-    <clear />
-    <add key="dotnet-core" value="https://dotnet.myget.org/F/dotnet-core/api/v3/index.json" />
-    <add key="nugetbuild" value="https://www.myget.org/F/nugetbuild/api/v3/index.json" />
-  </packageSources>
-</configuration>
diff --git a/test/Microsoft.DotNet.Watcher.Tools.FunctionalTests/TestProjects/Dependency/Dependency.csproj b/test/Microsoft.DotNet.Watcher.Tools.FunctionalTests/TestProjects/Dependency/Dependency.csproj
index c48eaffb24..f800ba3b09 100644
--- a/test/Microsoft.DotNet.Watcher.Tools.FunctionalTests/TestProjects/Dependency/Dependency.csproj
+++ b/test/Microsoft.DotNet.Watcher.Tools.FunctionalTests/TestProjects/Dependency/Dependency.csproj
@@ -1,11 +1,14 @@
 <Project Sdk="Microsoft.NET.Sdk">
+
   <PropertyGroup>
     <TargetFramework>netstandard1.5</TargetFramework>
-    <OutputType>Library</OutputType>
+    <OutputType>library</OutputType>
   </PropertyGroup>
+
   <ItemGroup>
     <Compile Include="**\*.cs" />
     <EmbeddedResource Include="**\*.resx" />
     <PackageReference Include="NETStandard.Library" Version="1.6.0" />
   </ItemGroup>
+
 </Project>
\ No newline at end of file
diff --git a/test/Microsoft.DotNet.Watcher.Tools.FunctionalTests/TestProjects/Dependency/NuGet.config b/test/Microsoft.DotNet.Watcher.Tools.FunctionalTests/TestProjects/Dependency/NuGet.config
deleted file mode 100644
index d8093c7fa9..0000000000
--- a/test/Microsoft.DotNet.Watcher.Tools.FunctionalTests/TestProjects/Dependency/NuGet.config
+++ /dev/null
@@ -1,8 +0,0 @@
-<?xml version="1.0" encoding="utf-8"?>
-<configuration>
-  <packageSources>
-    <clear />
-    <add key="dotnet-core" value="https://dotnet.myget.org/F/dotnet-core/api/v3/index.json" />
-    <add key="nugetbuild" value="https://www.myget.org/F/nugetbuild/api/v3/index.json" />
-  </packageSources>
-</configuration>
diff --git a/test/Microsoft.DotNet.Watcher.Tools.FunctionalTests/TestProjects/GlobbingApp/GlobbingApp.csproj b/test/Microsoft.DotNet.Watcher.Tools.FunctionalTests/TestProjects/GlobbingApp/GlobbingApp.csproj
index 380a05f12b..7a6df0e8bc 100644
--- a/test/Microsoft.DotNet.Watcher.Tools.FunctionalTests/TestProjects/GlobbingApp/GlobbingApp.csproj
+++ b/test/Microsoft.DotNet.Watcher.Tools.FunctionalTests/TestProjects/GlobbingApp/GlobbingApp.csproj
@@ -1,11 +1,14 @@
 <Project Sdk="Microsoft.NET.Sdk">
+
   <PropertyGroup>
     <TargetFramework>netcoreapp1.0</TargetFramework>
-    <OutputType>Exe</OutputType>
+    <OutputType>exe</OutputType>
   </PropertyGroup>
+
   <ItemGroup>
     <Compile Include="Program.cs;include\*.cs" Exclude="exclude\*" />
     <EmbeddedResource Include="**\*.resx"  />
     <PackageReference Include="Microsoft.NETCore.App" Version="1.0.1" />
   </ItemGroup>
+
 </Project>
\ No newline at end of file
diff --git a/test/Microsoft.DotNet.Watcher.Tools.FunctionalTests/TestProjects/GlobbingApp/NuGet.config b/test/Microsoft.DotNet.Watcher.Tools.FunctionalTests/TestProjects/GlobbingApp/NuGet.config
deleted file mode 100644
index d8093c7fa9..0000000000
--- a/test/Microsoft.DotNet.Watcher.Tools.FunctionalTests/TestProjects/GlobbingApp/NuGet.config
+++ /dev/null
@@ -1,8 +0,0 @@
-<?xml version="1.0" encoding="utf-8"?>
-<configuration>
-  <packageSources>
-    <clear />
-    <add key="dotnet-core" value="https://dotnet.myget.org/F/dotnet-core/api/v3/index.json" />
-    <add key="nugetbuild" value="https://www.myget.org/F/nugetbuild/api/v3/index.json" />
-  </packageSources>
-</configuration>
diff --git a/test/Microsoft.DotNet.Watcher.Tools.FunctionalTests/TestProjects/NoDepsApp/NoDepsApp.csproj b/test/Microsoft.DotNet.Watcher.Tools.FunctionalTests/TestProjects/NoDepsApp/NoDepsApp.csproj
index 7ad3f30ac9..5cbd709f53 100644
--- a/test/Microsoft.DotNet.Watcher.Tools.FunctionalTests/TestProjects/NoDepsApp/NoDepsApp.csproj
+++ b/test/Microsoft.DotNet.Watcher.Tools.FunctionalTests/TestProjects/NoDepsApp/NoDepsApp.csproj
@@ -1,11 +1,14 @@
 <Project Sdk="Microsoft.NET.Sdk">
+
   <PropertyGroup>
     <TargetFramework>netcoreapp1.0</TargetFramework>
-    <OutputType>Exe</OutputType>
+    <OutputType>exe</OutputType>
   </PropertyGroup>
+
   <ItemGroup>
     <Compile Include="**\*.cs" />
     <EmbeddedResource Include="**\*.resx" />
     <PackageReference Include="Microsoft.NETCore.App" Version="1.0.1" />
   </ItemGroup>
+
 </Project>
\ No newline at end of file
diff --git a/test/Microsoft.DotNet.Watcher.Tools.FunctionalTests/TestProjects/NoDepsApp/NuGet.config b/test/Microsoft.DotNet.Watcher.Tools.FunctionalTests/TestProjects/NoDepsApp/NuGet.config
deleted file mode 100644
index d8093c7fa9..0000000000
--- a/test/Microsoft.DotNet.Watcher.Tools.FunctionalTests/TestProjects/NoDepsApp/NuGet.config
+++ /dev/null
@@ -1,8 +0,0 @@
-<?xml version="1.0" encoding="utf-8"?>
-<configuration>
-  <packageSources>
-    <clear />
-    <add key="dotnet-core" value="https://dotnet.myget.org/F/dotnet-core/api/v3/index.json" />
-    <add key="nugetbuild" value="https://www.myget.org/F/nugetbuild/api/v3/index.json" />
-  </packageSources>
-</configuration>
diff --git a/test/Microsoft.DotNet.Watcher.Tools.Tests/Microsoft.DotNet.Watcher.Tools.Tests.csproj b/test/Microsoft.DotNet.Watcher.Tools.Tests/Microsoft.DotNet.Watcher.Tools.Tests.csproj
index c4885a4fab..d4201a9e72 100644
--- a/test/Microsoft.DotNet.Watcher.Tools.Tests/Microsoft.DotNet.Watcher.Tools.Tests.csproj
+++ b/test/Microsoft.DotNet.Watcher.Tools.Tests/Microsoft.DotNet.Watcher.Tools.Tests.csproj
@@ -1,9 +1,12 @@
 <Project Sdk="Microsoft.NET.Sdk">
+
   <Import Project="..\dir.props" />
+
   <PropertyGroup>
     <TargetFramework>netcoreapp1.0</TargetFramework>
-    <OutputType>Exe</OutputType>
+    <OutputType>exe</OutputType>
   </PropertyGroup>
+
   <ItemGroup>
     <Compile Include="**\*.cs" />
     <Compile Include="..\Shared\**\*.cs" />
@@ -11,5 +14,7 @@
     <Content Include="..\..\src\Microsoft.DotNet.Watcher.Tools\toolassets\DotNetWatchOuter.targets" Link="toolassets\DotNetWatchOuter.targets" CopyToOutputDirectory="PreserveNewest" />
     <Content Include="..\..\src\Microsoft.DotNet.Watcher.Tools\toolassets\DotNetWatchCommon.targets" Link="toolassets\DotNetWatchCommon.targets" CopyToOutputDirectory="PreserveNewest" />
     <ProjectReference Include="..\..\src\Microsoft.DotNet.Watcher.Tools\Microsoft.DotNet.Watcher.Tools.csproj" />
+    <PackageReference Include="Microsoft.NETCore.App" Version="1.0.1" />
   </ItemGroup>
-</Project>
\ No newline at end of file
+
+</Project>
diff --git a/test/Microsoft.Extensions.SecretManager.Tools.Tests/Microsoft.Extensions.SecretManager.Tools.Tests.csproj b/test/Microsoft.Extensions.SecretManager.Tools.Tests/Microsoft.Extensions.SecretManager.Tools.Tests.csproj
index 503a9ed18f..29ea81b6aa 100644
--- a/test/Microsoft.Extensions.SecretManager.Tools.Tests/Microsoft.Extensions.SecretManager.Tools.Tests.csproj
+++ b/test/Microsoft.Extensions.SecretManager.Tools.Tests/Microsoft.Extensions.SecretManager.Tools.Tests.csproj
@@ -1,12 +1,17 @@
 <Project Sdk="Microsoft.NET.Sdk">
+
   <Import Project="..\dir.props" />
+
   <PropertyGroup>
     <TargetFramework>netcoreapp1.0</TargetFramework>
-    <OutputType>Exe</OutputType>
+    <OutputType>exe</OutputType>
   </PropertyGroup>
+
   <ItemGroup>
     <Compile Include="**\*.cs" />
     <Compile Include="..\Shared\**\*.cs" />
     <ProjectReference Include="..\..\src\Microsoft.Extensions.SecretManager.Tools\Microsoft.Extensions.SecretManager.Tools.csproj" />
+    <PackageReference Include="Microsoft.NETCore.App" Version="1.0.1" />
   </ItemGroup>
+
 </Project>
\ No newline at end of file
diff --git a/test/Microsoft.Extensions.Tools.Tests/Microsoft.Extensions.Tools.Tests.csproj b/test/Microsoft.Extensions.Tools.Tests/Microsoft.Extensions.Tools.Tests.csproj
index 57f7f2c63b..775ec194cd 100644
--- a/test/Microsoft.Extensions.Tools.Tests/Microsoft.Extensions.Tools.Tests.csproj
+++ b/test/Microsoft.Extensions.Tools.Tests/Microsoft.Extensions.Tools.Tests.csproj
@@ -1,11 +1,16 @@
 <Project Sdk="Microsoft.NET.Sdk">
+
   <Import Project="..\dir.props" />
+
   <PropertyGroup>
     <TargetFramework>netcoreapp1.0</TargetFramework>
-    <OutputType>Exe</OutputType>
+    <OutputType>exe</OutputType>
   </PropertyGroup>
+
   <ItemGroup>
     <Compile Include="**\*.cs" />
     <Compile Include="..\..\shared\**\*.cs" />
+    <PackageReference Include="Microsoft.NETCore.App" Version="1.0.1" />
   </ItemGroup>
+
 </Project>
\ No newline at end of file
diff --git a/test/dir.props b/test/dir.props
index 1fff509174..a0553297be 100644
--- a/test/dir.props
+++ b/test/dir.props
@@ -2,7 +2,6 @@
   <Import Project="..\dir.props" />
 
   <ItemGroup>
-    <PackageReference Include="Microsoft.NETCore.App" Version="1.0.1" />
     <PackageReference Include="Microsoft.NET.Test.Sdk" Version="15.0.0-preview-20161123-03" />
     <PackageReference Include="xunit" Version="2.2.0-beta4-build3444" />
     <PackageReference Include="xunit.runner.visualstudio" Version="2.2.0-beta4-build1194" />